Connexions

Sections
You are here: Home » Content » Introduction to Sequence Alignment

About: Introduction to Sequence Alignment

Module by: Susan Cates. E-mail the author

View the content: Introduction to Sequence Alignment

Metadata

Name: Introduction to Sequence Alignment
ID: m11026
Language: English (en)
Summary: This module is an introduction to pairwise sequence alignments between a query sequence and a sequence database, using NCBI's BLAST, and between a query sequence and a genome, using UCSC's BLAT.
Subject: Science and Technology
Keywords: amino acid sequence, bioinformatics, BLAST, BLAT, nucleotide sequence, pair-wise sequence alignment, sequence alignment
Document Type: -//CNX//DTD CNXML 0.5 plus MathML//EN
License: Creative Commons Attribution License CC-BY 1.0
Authors: Susan Cates (mscates@bioc.rice.edu)
Copyright Holders: Susan Cates (mscates@bioc.rice.edu)
Maintainers: Susan Cates (mscates@bioc.rice.edu)
Latest version: 2.12 (history)
First publication date: Jan 24, 2003 12:00 am US/Central
Last revision to module: Sep 4, 2007 11:35 am GMT-5

Downloads

PDF: m11026_2.12.pdf PDF file, for viewing content offline and printing. Learn more.
XML: m11026_2.12.cnxml XML that defines the structure and contents of the module, minus any included media files. Can be reimported in the editing interface. Learn more.

Version History

Version: 2.13 Aug 26, 2008 3:51 pm GMT-5 by Susan Cates
Changes: 
minor edits
Version: 2.12 Sep 4, 2007 11:35 am GMT-5 by Susan Cates Currently viewing this version.
Changes: 
minor edits
Version: 2.11 Sep 4, 2007 11:24 am GMT-5 by Susan Cates
Changes: 
updated for the new NCBI interface and for changes in the default BLAT display
Version: 2.10 Jan 10, 2007 2:33 pm US/Central by Susan Cates
Changes: 
 updates for web site interfaces changes since last year
Version: 2.9 Jan 23, 2006 2:00 pm US/Central by Susan Cates
Changes: 
fixed bad link
Version: 2.8 Jan 16, 2006 4:57 pm US/Central by Susan Cates
Changes: 
minor edits
Version: 2.7 Feb 16, 2005 4:17 pm US/Central by Susan Cates
Changes: 
reworded ambiguous exercise
Version: 2.6 Jan 19, 2005 1:09 pm US/Central by Susan Cates
Changes: 
inserted <exercise> and <problem> tags for questions
Version: 2.5 Jan 28, 2004 4:05 pm US/Central by Susan Cates
Changes: 
reworded blast instructions
Version: 2.4 Jan 16, 2004 2:19 pm US/Central by Susan Cates
Changes: 
updated questions from last year
Version: 2.3 Jan 15, 2004 6:37 pm US/Central by Susan Cates
Changes: 
converted to cnxml 0.5
Version: 2.2 Jan 14, 2004 4:10 pm US/Central by Susan Cates
Changes: 
none
Version: 2.1 Jan 30, 2003 12:00 am US/Central by (Unknown)
Changes: 
changed format of nucleotide sequence using codeblock syntax
Version: 2.0 Jan 24, 2003 12:00 am US/Central by (Unknown)
Changes: 
Intro to Sequence Alignment, V1

How to Reuse and Attribute This Content

If you derive a copy of this content using a Connexions account and publish your version, proper attribution of the original work will be automatically done for you.

If you reuse this work elsewhere, in order to comply with the attribution requirements of the license (CC-BY 1.0), you must include

  • the authors' names: Susan Cates
  • the title of the work: Introduction to Sequence Alignment
  • the Connexions URL where the work can be found: http://cnx.org/content/m11026/2.12/

See the citation section below for examples you can copy.

How to Cite and Attribute This Content

The following citation styles comply with the attribution requirements for the license (CC-BY 1.0) of this work:

American Chemical Society (ACS) Style Guide:

Cates, S. Introduction to Sequence Alignment, Connexions Web site. http://cnx.org/content/m11026/2.12/, Sep 4, 2007.

American Medical Assocation (AMA) Manual of Style:

Cates S. Introduction to Sequence Alignment [Connexions Web site]. September 4, 2007. Available at: http://cnx.org/content/m11026/2.12/.

American Psychological Assocation (APA) Publication Manual:

Cates, S. (2007, September 4). Introduction to Sequence Alignment. Retrieved from the Connexions Web site: http://cnx.org/content/m11026/2.12/

Chicago Manual of Style (Bibliography):

Cates, Susan. "Introduction to Sequence Alignment." Connexions. September 4, 2007. http://cnx.org/content/m11026/2.12/.

Chicago Manual of Style (Note):

Susan Cates, "Introduction to Sequence Alignment," Connexions, September 4, 2007, http://cnx.org/content/m11026/2.12/.

Chicago Manual of Style (Reference, in Author-Date style):

Cates, S. 2007. Introduction to Sequence Alignment. Connexions, September 4, 2007. http://cnx.org/content/m11026/2.12/.

Modern Languages Association (MLA) Style Manual:

Cates, Susan. Introduction to Sequence Alignment. Connexions. 4 Sep. 2007 <http://cnx.org/content/m11026/2.12/>.