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About: Motion Planning for Proteins: Biophysics and Applications

Module by: Lydia E. Kavraki. E-mail the author

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Metadata

Name: Motion Planning for Proteins: Biophysics and Applications
ID: m11449
Language: English (en)
Summary: This module introduces the concept of free energy and potential fields in the context of protein conformation spaces and motion planning. It then provides examples of applications of motion planning techniques to problems from structural computational biology.
Subject: Science and Technology
Keywords: CHARMM, EST, force field, free energy, molecular potential, motion planning, path planner, planner, potential field, potential function, PRM, protein, robotics, RRT, SRS, tree-based
Document Type: -//CNX//DTD CNXML 0.5 plus MathML//EN
License: Creative Commons Attribution License CC-BY 1.0

Authors: Lydia E. Kavraki (kavraki@rice.edu)
Copyright Holders: Lydia E. Kavraki (kavraki@rice.edu)
Maintainers: Lydia E. Kavraki (kavraki@rice.edu), Allison Heath (aheath@rice.edu), Amarda Shehu (shehua@cs.rice.edu), David Schwarz (dschwarz@rice.edu), Hernan Stamati (hstamati@cs.rice.edu)

Latest version: 1.20 (history)
First publication date: Jul 14, 2003 4:59 pm -0500
Last revision to module: Mar 22, 2007 4:18 pm -0500

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Version History

Version: 1.20 Mar 22, 2007 4:18 pm -0500 by Hernan Stamati
Changes:
Resized some images.

Version: 1.19 Mar 10, 2007 7:58 pm -0600 by Hernan Stamati
Changes:
Added suggested edits.

Version: 1.18 May 9, 2006 8:32 pm -0500 by David Schwarz
Changes:
Changed Boltzmann latex image.

Version: 1.17 May 9, 2006 8:10 pm -0500 by David Schwarz
Changes:
Edited, added references, changed roles.

Version: 1.16 May 9, 2006 6:27 pm -0500 by David Schwarz
Changes:
Editing, added references.

Version: 1.15 May 2, 2006 8:13 pm -0500 by David Schwarz
Changes:
Added definition of symbols to Applications figures.  Edited Applications text for clarity and accessibility.

Version: 1.14 Apr 25, 2006 1:52 am -0500 by David Schwarz
Changes:
Fixed in-page links and table of contents.

Version: 1.13 Apr 25, 2006 12:42 am -0500 by David Schwarz
Changes:
Added references and links.

Version: 1.12 Apr 24, 2006 2:03 pm -0500 by David Schwarz
Changes:
Finished Pande, added docking section.

Version: 1.11 Apr 23, 2006 11:16 pm -0500 by David Schwarz
Changes:
Added information to SRS, Amato, and MSM sections.

Version: 1.10 Apr 23, 2006 12:17 am -0500 by David Schwarz
Changes:
Finished SRS section and added Amato section.

Version: 1.9 Apr 18, 2006 9:03 am -0500 by David Schwarz
Changes:
Change module to an introduction to force fields and applications of roadmap methods to protein modeling.

Version: 1.8 Mar 23, 2006 4:34 pm -0600 by Chuck Bearden
Changes:
Publishing to make new roles effective.

Version: 1.7 Sep 15, 2003 3:36 pm -0500 by Amarda Shehu
Changes:
more mathml markup

Version: 1.6 Sep 15, 2003 1:49 pm -0500 by Amarda Shehu
Changes:
marked up mathml

Version: 1.5 Jul 23, 2003 2:06 pm -0500 by Allison Heath
Changes:
changed stuff

Version: 1.4 Jul 23, 2003 1:12 pm -0500 by Allison Heath
Changes:
changed

Version: 1.3 Jul 23, 2003 1:06 pm -0500 by Allison Heath
Changes:
added content

Version: 1.2 Jul 15, 2003 1:04 pm -0500 by Allison Heath
Changes:
author change?

Version: 1.1 Jul 15, 2003 1:02 pm -0500 by Allison Heath
Changes:
skeleton

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American Chemical Society (ACS) Style Guide:

Kavraki, L. Motion Planning for Proteins: Biophysics and Applications, OpenStax-CNX Web site. http://cnx.org/content/m11449/1.20/, Mar 22, 2007.

American Medical Assocation (AMA) Manual of Style:

Kavraki L. Motion Planning for Proteins: Biophysics and Applications [OpenStax-CNX Web site]. March 22, 2007. Available at: http://cnx.org/content/m11449/1.20/.

American Psychological Assocation (APA) Publication Manual:

Kavraki, L. (2007, March 22). Motion Planning for Proteins: Biophysics and Applications. Retrieved from the OpenStax-CNX Web site: http://cnx.org/content/m11449/1.20/

Chicago Manual of Style (Bibliography):

Kavraki, Lydia. "Motion Planning for Proteins: Biophysics and Applications." OpenStax-CNX. March 22, 2007. http://cnx.org/content/m11449/1.20/.

Chicago Manual of Style (Note):

Lydia Kavraki, "Motion Planning for Proteins: Biophysics and Applications," OpenStax-CNX, March 22, 2007, http://cnx.org/content/m11449/1.20/.

Chicago Manual of Style (Reference, in Author-Date style):

Kavraki, L. 2007. Motion Planning for Proteins: Biophysics and Applications. OpenStax-CNX, March 22, 2007. http://cnx.org/content/m11449/1.20/.

Modern Languages Association (MLA) Style Manual:

Kavraki, Lydia. Motion Planning for Proteins: Biophysics and Applications. OpenStax-CNX. 22 Mar. 2007 <http://cnx.org/content/m11449/1.20/>.